si:ch73-185c24.2 si:ch73-185c24.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch73-185c24.2provided by ZNC
Official Full Name: si:ch73-185c24.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-131121-189
See related: Ensembl:ENSDARG00000096908 AllianceGenome:ZFIN:ZDB-GENE-131121-189
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be located in membrane. Orthologous to human C1orf210 (chromosome 1 open reading frame 210). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

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Location:: chromosome: 6

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (34028532..34036443)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (34043842..34051753)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: type III endosome membrane protein TEMP

Names: leucine-rich repeat-containing protein 19-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001326582.1 → NP_001313511.1 type III endosome membrane protein TEMP precursor

Status: VALIDATED

Source sequence(s)

FP236538

UniProtKB/TrEMBL

A0A8M1P8U6, X1WDW0

Related

ENSDARP00000128409.1, ENSDART00000155827.2

Conserved Domains (3) summary

sd00031
Location:82 → 105

LRR_1; leucine-rich repeat [structural motif]

pfam13855
Location:71 → 116

LRR_8; Leucine rich repeat

pfam15176
Location:190 → 284

LRR19-TM; Leucine-rich repeat family 19 TM domain