U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

jac4 jacalin 4 [ Danio rerio (zebrafish) ]

Gene ID: 795300, updated on 17-Aug-2024

Summary

Official Symbol
jac4provided by ZNC
Official Full Name
jacalin 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8643
See related
Ensembl:ENSDARG00000092352 AllianceGenome:ZFIN:ZDB-GENE-030131-8643
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa92h10; wu:fa92h10; si:dkeyp-32g11.9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8457078..8458457)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8211120..8212555)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene natterin-like protein Neighboring gene si:dkeyp-32g11.8 Neighboring gene hypothetical protein LOC564481 Neighboring gene jacalin 6

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
jacalin 4; natterin-like protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386396.1NP_001373325.1  jacalin 4

    Status: VALIDATED

    Source sequence(s)
    CR382283
    UniProtKB/TrEMBL
    A0A8M1Q1F9, E9QIV8
    Conserved Domains (3) summary
    cd09302
    Location:15144
    Jacalin_like; Jacalin-like lectin domain
    cd10140
    Location:194245
    PFM_aerolysin_family; putative membrane-spanning region [structural motif]
    cl40431
    Location:146313
    PFM_aerolysin_family; pore-forming module of aerolysin-type beta-barrel pore-forming proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    8457078..8458457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001335402.7XP_001335438.1  natterin-like protein

    UniProtKB/TrEMBL
    E9QIV8
    Related
    ENSDARP00000142255.1, ENSDART00000172880.2
    Conserved Domains (3) summary
    cd09302
    Location:15144
    Jacalin_like; Jacalin-like lectin domain
    cd10140
    Location:194245
    PFM_aerolysin_family; putative membrane-spanning region [structural motif]
    cl40431
    Location:146313
    PFM_aerolysin_family; pore-forming module of aerolysin-type beta-barrel pore-forming proteins