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si:ch211-147a11.3 si:ch211-147a11.3 [ Danio rerio (zebrafish) ]

Gene ID: 795658, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-147a11.3provided by ZNC
Official Full Name
si:ch211-147a11.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-102
See related
Ensembl:ENSDARG00000069009 AllianceGenome:ZFIN:ZDB-GENE-060503-102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158389
Summary
Predicted to be located in nucleus. Orthologous to human C1orf174 (chromosome 1 open reading frame 174). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:ch211-147a11.3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (22283567..22288258, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (22262328..22267051, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene nephronophthisis 4 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7, like Neighboring gene DNA fragmentation factor, beta polypeptide (caspase-activated DNase) Neighboring gene centrosomal protein 104

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Knockout of miR-184 in zebrafish leads to ocular abnormalities by elevating p21 levels. Zhang J, et al. FASEB J, 2023 May. PMID 37086087
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC158389, MGC165405

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UPF0688 protein C1orf174 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044837.1 → NP_001038302.1  UPF0688 protein C1orf174 homolog

    Status: PROVISIONAL

    Source sequence(s)
    CR352301
    UniProtKB/Swiss-Prot
    Q1L9C7
    Related
    ENSDARP00000120453.1, ENSDART00000140978.2
    Conserved Domains (1) summary
    pfam15772
    Location:34 → 155
    UPF0688; UPF0688 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    22283567..22288258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166903.5 → XP_005166960.1  UPF0688 protein C1orf174 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8M2BEX7, Q1L9C9
    Related
    ENSDARP00000090814.4, ENSDART00000100042.5
    Conserved Domains (1) summary
    pfam15772
    Location:59 → 180
    UPF0688; UPF0688 family

  2. XM_005166902.4 → XP_005166959.1  UPF0688 protein C1orf174 homolog isoform X1

    See identical proteins and their annotated locations for XP_005166959.1

    UniProtKB/Swiss-Prot
    A5PL76, A8KBU8, Q1L9C7, Q1L9C8
    Related
    ENSDARP00000090818.3, ENSDART00000100046.5
    Conserved Domains (1) summary
    pfam15772
    Location:60 → 181
    UPF0688; UPF0688 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1L9C7.1 GenPept UniProtKB/Swiss-Prot:Q1L9C7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.