U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nfkbib nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta [ Danio rerio (zebrafish) ]

Gene ID: 797834, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
nfkbibprovided by ZNC
Official Full Name
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, betaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-529
See related
Ensembl:ENSDARG00000030087 AllianceGenome:ZFIN:ZDB-GENE-070705-529
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb606; sb:cb606; si:dkeyp-110c7.1
Summary
Predicted to be involved in cellular response to lipopolysaccharide. Is expressed in cloaca; liver; peripheral olfactory organ; polster; and pronephric duct. Orthologous to human NFKBIB (NFKB inhibitor beta). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nfkbib in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37032038..37036929)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36431885..36436776)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495609 Neighboring gene gap junction protein delta 1a Neighboring gene finTRIM family, member 84 Neighboring gene tubulin polymerization-promoting protein family member 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Epigallocatechin-3-gallate suppresses neutrophil migration speed in a transgenic zebrafish model accompanied by reduced inflammatory mediators. Nguyen T, et al. J Inflamm Res, 2019. PMID 31695470, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
NF-kappa-B inhibitor beta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128795.1 → NP_001122267.1  NF-kappa-B inhibitor beta

    See identical proteins and their annotated locations for NP_001122267.1

    Status: PROVISIONAL

    Source sequence(s)
    BC163433
    UniProtKB/TrEMBL
    A0A8M1NI06, B3DJC4
    Related
    ENSDARP00000045035.4, ENSDART00000045036.7
    Conserved Domains (4) summary
    cd00204
    Location:196 → 326
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:206 → 302
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:291 → 346
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:235 → 269
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    37032038..37036929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394595.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    278189..283063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.