U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

myl6 myosin, light chain 6, alkali, smooth muscle and non-muscle [ Danio rerio (zebrafish) ]

Gene ID: 798632, updated on 2-Nov-2024

Summary

Official Symbol
myl6provided by ZNC
Official Full Name
myosin, light chain 6, alkali, smooth muscle and non-muscleprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-28
See related
Ensembl:ENSDARG00000008494 AllianceGenome:ZFIN:ZDB-GENE-041010-28
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103624
Summary
Predicted to be a structural constituent of muscle. Predicted to be part of myosin II complex. Orthologous to human MYL6 (myosin light chain 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See myl6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (39874179..39893502, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (39876643..39896018, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene complement component 1, q subcomponent-like 4b Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C2 Neighboring gene Ts translation elongation factor, mitochondrial Neighboring gene endonuclease, polyU-specific

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC103624

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of muscle IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of myosin II complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
myosin light polypeptide 6
Names
myosin, light chain 6, alkali, smooth muscle and non-muscle like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005955.1NP_001005955.1  myosin light polypeptide 6

    See identical proteins and their annotated locations for NP_001005955.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083444
    UniProtKB/TrEMBL
    A0A8M1N2K8, Q5XJ62
    Related
    ENSDARP00000072128.4, ENSDART00000077662.6
    Conserved Domains (1) summary
    PTZ00184
    Location:5150
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    39874179..39893502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166078.5XP_005166135.1  myosin light polypeptide 6 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BDM7, E9QB41
    Related
    ENSDARP00000116624.1, ENSDART00000135631.3
    Conserved Domains (1) summary
    PTZ00184
    Location:5150
    PTZ00184; calmodulin; Provisional
  2. XM_005166077.5XP_005166134.1  myosin light polypeptide 6 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDG5, F1QWU4
    Related
    ENSDARP00000108226.2, ENSDART00000130613.3
    Conserved Domains (3) summary
    cd00051
    Location:88142
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13405
    Location:1140
    EF-hand_6; EF-hand domain
    cl08302
    Location:1194
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

Reference GRCz11 ALT_DRER_TU_3

Genomic

  1. NW_018395382.1 Reference GRCz11 ALT_DRER_TU_3

    Range
    217109..228579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)