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gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Danio rerio (zebrafish) ]

Gene ID: 799876, updated on 2-Nov-2024

Summary

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Official Symbol
gpbp1l1provided by ZNC
Official Full Name
GC-rich promoter binding protein 1-like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-031118-220
See related
Ensembl:ENSDARG00000075569 AllianceGenome:ZFIN:ZDB-GENE-031118-220
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc48e01; fc88g04; wu:fc48e01; wu:fc88g04; wu:fi81c05
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human GPBP1L1 (GC-rich promoter binding protein 1 like 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See gpbp1l1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (33881432..33898114)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (33896720..33913271)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase 2 Neighboring gene transmembrane protein 69 Neighboring gene coiled-coil domain containing 17 Neighboring gene coiled-coil domain containing 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vasculin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    33881432..33898114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477183.2 → XP_021332858.1  vasculin-like protein 1

    UniProtKB/TrEMBL
    A0A0R4IH70, A0A8M9Q0P7
    Related
    ENSDARP00000134071.1, ENSDART00000165710.2
    Conserved Domains (2) summary
    pfam15337
    Location:389 → 459
    Vasculin; Vascular protein family Vasculin-like 1
    cl26464
    Location:174 → 321
    Atrophin-1; Atrophin-1 family

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395259.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    186175..202280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001336035.9 → XP_001336071.2  vasculin-like protein 1

    UniProtKB/TrEMBL
    A0A8M1PS38
    Conserved Domains (2) summary
    pfam15337
    Location:389 → 459
    Vasculin; Vascular protein family Vasculin-like 1
    cl26464
    Location:174 → 321
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
Heading Accession and Version

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