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CASP3 Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817280, updated on 7-Sep-2023

Summary

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Gene symbol
CASP3
Gene description
Uncharacterized protein family (UPF0497)
Primary source
Araport:AT2G27370
Locus tag
AT2G27370
See related
TAIR:AT2G27370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Casparian strip membrane domain protein 3; F12K2.5; F12K2_5
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Genomic context

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See CASP3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (11708429..11710128, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene OTU-like cysteine protease family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene pseudo Neighboring gene extensin proline-rich 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel protein family mediates Casparian strip formation in the endodermis. Roppolo D, et al. Nature, 2011 May 19. PMID 21593871
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128296.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell-cell junction assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of amyloid-beta formation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in proteolysis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of protein stability ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Casparian strip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Uncharacterized protein family (UPF0497)
NP_180305.1
  • Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36100.1); Has 591 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 591; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11708429..11710128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128296.4 → NP_180305.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180305.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZQI2
    UniProtKB/TrEMBL
    A0A178VTI8, A0A5S9X1P7
    Conserved Domains (1) summary
    pfam04535
    Location:56 → 205
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQI2.1

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