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EPR1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817282, updated on 11-Sep-2024

Summary

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Official Symbol
EPR1
Primary source
TAIR:AT2G27380
Locus tag
AT2G27380
See related
Araport:AT2G27380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATEPR1; extensin proline-rich 1; F12K2.4; F12K2_4
Summary
Encodes an extensin like gene involved in seed germination.
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (11713411..11715774)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene pseudo Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis AtEPR1 extensin-like gene is specifically expressed in endosperm during seed germination. Dubreucq B, et al. Plant J, 2000 Sep. PMID 10972890
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128298.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of cell wall TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type cell wall modification TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within seed germination TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
extensin proline-rich 1
NP_180307.1
  • extensin proline-rich 1 (EPR1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall modification, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: micropylar endosperm; BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 687861 Blast hits to 76128 proteins in 2770 species: Archae - 2570; Bacteria - 168893; Metazoa - 232232; Fungi - 83762; Plants - 88472; Viruses - 18896; Other Eukaryotes - 93036 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11713411..11715774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128298.2 → NP_180307.1  extensin proline-rich 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180307.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZQI0
    UniProtKB/TrEMBL
    A0A654EWN5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQI0.1

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