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fanconi anemia group F protein (FANCF) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834424, updated on 18-Sep-2024

Summary

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Official Full Name
fanconi anemia group F protein (FANCF)
Primary source
TAIR:AT5G44010
Locus tag
AT5G44010
See related
Araport:AT5G44010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRH10.12; MRH10_12
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (17706396..17709326, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SET-domain containing protein lysine methyltransferase family protein Neighboring gene Glutathione S-transferase family protein Neighboring gene uncharacterized protein Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene cellulose synthase A4 Neighboring gene eisosome SEG2-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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NM_123768.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Fanconi anaemia nuclear complex IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
fanconi anemia group F protein (FANCF)
NP_199214.2
  • unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17706396..17709326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344527.1 → NP_001330019.1  fanconi anemia group F protein (FANCF) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B9K4, A0A5S9YAU2, A0A7G2FGJ5
    Conserved Domains (1) summary
    pfam11107
    Location:11 → 151
    FANCF; Fanconi anemia group F protein (FANCF)

  2. NM_001344525.1 → NP_001330021.1  fanconi anemia group F protein (FANCF) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178URI6, A0A1P8B9J1, A0A384LFP4, A0A5S9YAU2
    Conserved Domains (1) summary
    pfam11107
    Location:11 → 151
    FANCF; Fanconi anemia group F protein (FANCF)

  3. NM_001344526.1 → NP_001330020.1  fanconi anemia group F protein (FANCF) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQA9, A0A178UQK4, A0A1P8B9I7, A0A384LQ12

  4. NM_123768.2 → NP_199214.2  fanconi anemia group F protein (FANCF) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199214.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K7F0, Q9FNC5
Nucleotide Protein
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