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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836231, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G61100
Locus tag
AT5G61100
See related
Araport:AT5G61100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.10; MAF19_10
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (24579090..24580481, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18 Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene zinc ion binding protein Neighboring gene zinc ion-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone reader activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in negative regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_200918.1
  • BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24579090..24580481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345442.1 → NP_001329950.1  uncharacterized protein AT5G61100 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178UHK3, Q67Z08, Q9FNQ5
    UniProtKB/TrEMBL
    A0A384KRA0
    Conserved Domains (1) summary
    cl22851
    Location:34 → 78
    PHD_SF; PHD finger superfamily

  2. NM_125503.2 → NP_200918.1  uncharacterized protein AT5G61100 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200918.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K1Z8
    Conserved Domains (1) summary
    cl22851
    Location:34 → 78
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNQ5.1

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