U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VIP4 leo1-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836236, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
VIP4
Official Full Name
leo1-like family protein
Primary source
TAIR:AT5G61150
Locus tag
AT5G61150
See related
Araport:AT5G61150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.15; MAF19_15; VERNALIZATION INDEPENDENCE 4
Summary
Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VIP4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (24603634..24607725, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plasmodesmata callose-binding protein 1 Neighboring gene U5 small nuclear ribonucleoprotein helicase Neighboring gene anthocyanin 5-aromatic acyltransferase 1 Neighboring gene Ribosomal protein S19e family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The VERNALIZATION INDEPENDENCE 4 gene encodes a novel regulator of FLOWERING LOCUS C. Zhang H, et al. Plant J, 2002 Sep. PMID 12207655
  2. A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family. Oh S, et al. Plant Cell, 2004 Nov. PMID 15472079, Free PMC Article
  3. Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. Xu L, et al. Mol Cell Biol, 2008 Feb. PMID 18070919, Free PMC Article
  4. PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin. Park S, et al. Plant Physiol, 2010 Jun. PMID 20363855, Free PMC Article
  5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_125508.2
NM_180906.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vernalization response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
leo1-like family protein
NP_200923.2
  • VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink).
NP_851237.1
  • VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 65962 Blast hits to 30671 proteins in 1602 species: Archae - 182; Bacteria - 8432; Metazoa - 26538; Fungi - 7901; Plants - 3149; Viruses - 848; Other Eukaryotes - 18912 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24603634..24607725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180906.2 → NP_851237.1  leo1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851237.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DF97, Q8L5W5, Q9FNQ0
    UniProtKB/TrEMBL
    A0A178UAP4, A0A5S9YGH7, A0A654GDL2
    Conserved Domains (2) summary
    TIGR00927
    Location:61 → 250
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam04004
    Location:262 → 422
    Leo1; Leo1-like protein

  2. NM_125508.2 → NP_200923.2  leo1-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200923.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAP4, A0A5S9YGH7, F4K204
    Conserved Domains (1) summary
    pfam04004
    Location:262 → 419
    Leo1; Leo1-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNQ0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools