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ARID/BRIGHT DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843984, updated on 18-Sep-2024

Summary

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Official Full Name
ARID/BRIGHT DNA-binding domain-containing protein
Primary source
TAIR:AT1G76510
Locus tag
AT1G76510
See related
Araport:AT1G76510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14G6.11; F14G6_11
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (28708339..28712968, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxy methylglutaryl CoA reductase 1 Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene Auxin efflux carrier family protein Neighboring gene Auxin efflux carrier family protein Neighboring gene cyclin-dependent kinase B2;1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
  2. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
  3. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
  4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_106301.4
NM_202427.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of histone deacetylase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARID/BRIGHT DNA-binding domain-containing protein
NP_001185411.1
  • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1).
NP_177777.3
  • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1); Has 538 Blast hits to 538 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 322; Fungi - 39; Plants - 149; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
NP_974156.1
  • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28708339..28712968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198482.2 → NP_001185411.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185411.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I2F0
    Conserved Domains (2) summary
    cd06464
    Location:374 → 454
    ACD_sHsps-like; Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally ...
    smart00501
    Location:143 → 257
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

  2. NM_001334729.1 → NP_001320306.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNR6, Q9C9K6
    UniProtKB/TrEMBL
    A0A178W194, A0A5S9WUV2
    Conserved Domains (2) summary
    cd00298
    Location:352 → 431
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
    smart00501
    Location:143 → 234
    BRIGHT; ARID (A/T-rich interaction domain) domain

  3. NM_202427.3 → NP_974156.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974156.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNR6, Q9C9K6
    UniProtKB/TrEMBL
    A0A178W194, A0A5S9WUV2
    Conserved Domains (2) summary
    cd00298
    Location:352 → 431
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
    smart00501
    Location:143 → 234
    BRIGHT; ARID (A/T-rich interaction domain) domain

  4. NM_106301.4 → NP_177777.3  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177777.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNR6, Q9C9K6
    UniProtKB/TrEMBL
    A0A178W194, A0A5S9WUV2
    Conserved Domains (2) summary
    cd00298
    Location:352 → 431
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
    smart00501
    Location:143 → 234
    BRIGHT; ARID (A/T-rich interaction domain) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WNR6.1

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