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STP3 [ Saccharomyces cerevisiae S288C ]

Gene ID: 851089, updated on 11-Sep-2024

Summary

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Official Symbol
STP3
Primary source
SGD:S000004367
Locus tag
YLR375W
See related
AllianceGenome:SGD:S000004367; FungiDB:YLR375W; VEuPathDB:YLR375W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (871697..872728)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene fatty acid elongase ELO3 Neighboring gene Vid22p Neighboring gene Psy3p Neighboring gene fructose 1,6-bisphosphate 1-phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae. Abdel-Sater F, et al. Genetics, 2004 Apr. PMID 15126393, Free PMC Article
  2. Mot1-mediated control of transcription complex assembly and activity. Dasgupta A, et al. EMBO J, 2005 May 4. PMID 15861138, Free PMC Article
  3. Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid. Mira NP, et al. OMICS, 2010 Oct. PMID 20955010, Free PMC Article
  4. A phenotypic profile of the Candida albicans regulatory network. Homann OR, et al. PLoS Genet, 2009 Dec. PMID 20041210, Free PMC Article
  5. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Badis G, et al. Mol Cell, 2008 Dec 26. PMID 19111667, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding HDA PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Stp3p
NP_013479.3
  • Zinc-finger hypothetical protein; possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids; STP3 has a paralog, STP4, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    871697..872728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182264.3 → NP_013479.3  TPA: Stp3p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_013479.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VZ11, Q05937
    UniProtKB/TrEMBL
    A7A1Q1, B5VNR2, C7GRW7, N1NYQ7
    Conserved Domains (2) summary
    COG5048
    Location:137 → 295
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:144 → 161
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q05937.1

Gene LinkOut

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