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YAR010C gag protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 851269, updated on 17-May-2024

Summary

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Gene symbol
YAR010C
Gene description
gag protein
Primary source
FungiDB:YAR010C
Locus tag
YAR010C
See related
SGD:S000000068; AllianceGenome:SGD:S000000068; VEuPathDB:YAR010C
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See YAR010C in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_001133.9 (164544..165866, complement)

Chromosome I - NC_001133.9Genomic Context describing neighboring genes Neighboring gene tRNA splicing endonuclease subunit SEN34 Neighboring gene truncated gag-pol fusion protein Neighboring gene tRNA-Ala Neighboring gene protein phosphatase regulator BUD14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001133.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-transcriptional cosuppression of Ty1 retrotransposition. Garfinkel DJ, et al. Genetics, 2003 Sep. PMID 14504219, Free PMC Article
  2. Selective autophagy regulates insertional mutagenesis by the Ty1 retrotransposon in Saccharomyces cerevisiae. Suzuki K, et al. Dev Cell, 2011 Aug 16. PMID 21839922
  3. Happy together: the life and times of Ty retrotransposons and their hosts. Lesage P, et al. Cytogenet Genome Res, 2005. PMID 16093660
  4. Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. Carr M, et al. PLoS One, 2012. PMID 23226439, Free PMC Article
  5. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Kim JM, et al. Genome Res, 1998 May. PMID 9582191

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrotransposition ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in retrotransposon nucleocapsid ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
gag protein
NP_009407.1
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; Gag processing produces capsid proteins; in YARCTy1-1 TYB is mutant and probably non-functional

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001133.9 Reference assembly

    Range
    164544..165866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178214.1 → NP_009407.1  TPA: gag protein [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_009407.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VPM2, O13528, P0CX57, P0CX58
    UniProtKB/TrEMBL
    A0A8H4BZ51, A7A2B1
    Conserved Domains (1) summary
    pfam01021
    Location:17 → 114
    TYA; TYA transposon protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CX57.1
P0CX58.1

Gene LinkOut

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Research Materials