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YDR316W-A gag protein [ Saccharomyces cerevisiae S288C ]

Gene ID: 851913, updated on 17-May-2024

Summary

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Gene symbol
YDR316W-A
Gene description
gag protein
Primary source
FungiDB:YDR316W-A
Locus tag
YDR316W-A
See related
SGD:S000007398; AllianceGenome:SGD:S000007398; VEuPathDB:YDR316W-A
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See YDR316W-A in Genome Data Viewer
Location:
chromosome: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_001136.10 (1096064..1097386)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene putative RNA methyltransferase Neighboring gene tRNA-Phe Neighboring gene gag-pol fusion protein Neighboring gene Him1p Neighboring gene Mcm21p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ty1 gag enhances the stability and nuclear export of Ty1 mRNA. Checkley MA, et al. Traffic, 2013 Jan. PMID 22998189, Free PMC Article
  2. Happy together: the life and times of Ty retrotransposons and their hosts. Lesage P, et al. Cytogenet Genome Res, 2005. PMID 16093660
  3. Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. Carr M, et al. PLoS One, 2012. PMID 23226439, Free PMC Article
  4. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Kim JM, et al. Genome Res, 1998 May. PMID 9582191
  5. Co-translational localization of an LTR-retrotransposon RNA to the endoplasmic reticulum nucleates virus-like particle assembly sites. Doh JH, et al. PLoS Genet, 2014 Mar. PMID 24603646, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrotransposition ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in retrotransposon nucleocapsid ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
gag protein
NP_058151.1
  • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    1096064..1097386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184424.1 → NP_058151.1  TPA: gag protein [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_058151.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D3DM68, P0CX65, P0CX66, P0CX67, P0CX68, P0CX69, Q12231
    UniProtKB/TrEMBL
    A6ZLP7, A7A1F6, A7A2A6
    Conserved Domains (1) summary
    pfam01021
    Location:17 → 114
    TYA; TYA transposon protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CX65.1
P0CX66.1
P0CX67.1
P0CX68.1
P0CX69.1

Gene LinkOut

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