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SBWP25_0034 internal virion lysozyme motif [ Pseudomonas phage phi-2 ]

Gene ID: 8673598, updated on 8-Jan-2023

Summary

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Gene symbol
SBWP25_0034
Gene description
internal virion lysozyme motif
Locus tag
SBWP25_0034
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas phage phi-2 (strain: phi 2, nat-host: Pseudomonas fluorescens SBW25)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Autographiviridae; Krylovirinae; Tunggulvirus; Tunggulvirus f2
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Genomic context

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Sequence:
NC_013638.1 (29954..32536)

NC_013638.1Genomic Context describing neighboring genes Neighboring gene predicted phage tail tubular protein B Neighboring gene internal virion protein Neighboring gene internal virion protein with endolysin domain Neighboring gene tail fiber protein Neighboring gene tail fiber assembly protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013638.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antagonistic coevolution accelerates molecular evolution. Paterson S, et al. Nature, 2010 Mar 11. PMID 20182425, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
internal virion lysozyme motif
YP_003345499.1
  • Putative C-terminus lysozyme motif internal virion protein, LKA1 gp47. Bacteriophage T4-like lysozymes hydrolyse the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls; cd00735. Trimmed to first Met.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013638.1 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_003345499.1 internal virion lysozyme motif [Pseudomonas phage phi-2]

    See identical proteins and their annotated locations for YP_003345499.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D2EBT8
    Conserved Domains (1) summary
    cl00222
    Location:722 → 847
    lysozyme_like; lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. ...
Nucleotide Protein
Heading Accession and Version

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