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LINC00923 long intergenic non-protein coding RNA 923 [ Homo sapiens (human) ]

Gene ID: 91948, updated on 26-Oct-2024

Summary

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Official Symbol
LINC00923provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 923provided by HGNC
Primary source
HGNC:HGNC:28088
See related
Ensembl:ENSG00000251209 AllianceGenome:HGNC:28088
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02254
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00923 in Genome Data Viewer
Location:
15q26.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (97742616..97874429, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (95508284..95640078, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (98285846..98417659, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2254 Neighboring gene RNA, 5S ribosomal pseudogene 401 Neighboring gene uncharacterized LOC101927310 Neighboring gene uncharacterized LOC105371007 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:98172111-98172323 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:98234570-98235769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98236083-98236582 Neighboring gene MPRA-validated peak2442 silencer Neighboring gene uncharacterized LOC124903585 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:98513642-98514841 Neighboring gene arrestin domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • long intergenic non-protein coding RNA 2254

Clone Names

  • MGC125556, MGC125557, MGC125558, MGC125559

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024172.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC027708, AK025311, BC105717

  2. NR_024173.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) is missing an internal exon compared to transcript variant 1, resulting in a shorter transcript.
    Source sequence(s)
    AC027708, BC105717
    Related
    ENST00000503874.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    97742616..97874429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    95508284..95640078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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