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LOC9266098 GDSL esterase/lipase At5g03980 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266098, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9266098
Gene description
GDSL esterase/lipase At5g03980
Locus tag
OSNPB_020608801
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC9266098 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24375755..24377493, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23893056..23894564, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene acetolactate synthase small subunit 1, chloroplastic Neighboring gene uncharacterized LOC112937821 Neighboring gene outer envelope pore protein 37, chloroplastic Neighboring gene uncharacterized LOC4329943 Neighboring gene uncharacterized LOC112937822

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDSL esterase/lipase At5g03980
Names
OSJNBa0030C08.38
Os02g0608801
P0496E03.11
putative lipase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    24375755..24377493 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771487.3 → XP_015626973.1  GDSL esterase/lipase At5g03980

    UniProtKB/TrEMBL
    A0A0P0VLS7, A2X723, Q6K1X6
    Conserved Domains (1) summary
    cd01837
    Location:43 → 390
    SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
Nucleotide Protein
Heading Accession and Version

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