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LOC9266978 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9266978, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9266978
Gene description
protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic
Locus tag
OSNPB_050105800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 8.2), flowers (RPKM 5.3) and 4 other tissues See more
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Genomic context

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See LOC9266978 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (320307..321561)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (312474..313738)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337558 Neighboring gene uncharacterized LOC4337559 Neighboring gene serine/arginine-rich splicing factor SR45 Neighboring gene zinc finger transcription factor YY1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic; uncharacterized protein LOC9266978
Names
Os05g0105800
protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    320307..321561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310814.1 → XP_066166911.1  protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1

  2. XM_066310815.1 → XP_066166912.1  uncharacterized protein LOC9266978 isoform X2

  3. XM_015782727.2 → XP_015638213.1  protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    B8AWW2
    Conserved Domains (1) summary
    PRK14289
    Location:39 → 97
    PRK14289; molecular chaperone DnaJ
Nucleotide Protein
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