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LOC9267129 phosphatidylinositol 4-kinase beta 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9267129, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9267129
Gene description
phosphatidylinositol 4-kinase beta 1
Locus tag
OSNPB_110209700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 19.3), leaves after flowering (RPKM 16.7) and 6 other tissues See more
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Genomic context

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See LOC9267129 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5709331..5719654, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5653220..5663612, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g59200-like Neighboring gene putative F-box protein At3g58860 Neighboring gene uncharacterized LOC4350049 Neighboring gene uncharacterized LOC4350050

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol 4-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 4-kinase beta 1
Names
Os11g0209700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    5709331..5719654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761640.3 → XP_015617126.1  phosphatidylinositol 4-kinase beta 1

    UniProtKB/TrEMBL
    B9V0M5, Q9LLP5
    Conserved Domains (2) summary
    cd05168
    Location:918 → 1208
    PI4Kc_III_beta; Catalytic domain of Type III Phosphoinositide 4-kinase beta
    pfam05793
    Location:304 → 615
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Nucleotide Protein
Heading Accession and Version

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