U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9267158 putative lipoxygenase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9267158, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC9267158
Gene description
putative lipoxygenase 5
Locus tag
OSNPB_040447100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LOX6
Expression
Biased expression in roots before flowering (RPKM 369.3) and leaves before flowering (RPKM 11.0) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9267158 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22797302..22801773)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22304767..22309335)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g09900-like Neighboring gene uncharacterized LOC107280682 Neighboring gene glutamate decarboxylase Neighboring gene D-galacturonate reductase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative lipoxygenase 5
Names
Os04g0447100

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22797302..22801773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781696.3 → XP_015637182.1  putative lipoxygenase 5

    UniProtKB/Swiss-Prot
    Q7XV13
    UniProtKB/TrEMBL
    Q01J86
    Conserved Domains (3) summary
    PLN02264
    Location:49 → 922
    PLN02264; lipoxygenase
    cd01751
    Location:102 → 228
    PLAT_LH2; PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense ...
    pfam00305
    Location:239 → 905
    Lipoxygenase; Lipoxygenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials