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LOC9267261 monosaccharide-sensing protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9267261, updated on 17-Jul-2024

Summary

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Gene symbol
LOC9267261
Gene description
monosaccharide-sensing protein 2
Locus tag
OSNPB_110620400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 10.0), roots before flowering (RPKM 8.7) and 6 other tissues See more
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Genomic context

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See LOC9267261 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26136080..26142769)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24184339..24191325)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene oligouridylate-binding protein 1B Neighboring gene probable non-specific lipid-transfer protein 2 Neighboring gene pollen receptor-like kinase 3 Neighboring gene transfer RNA serine (anticodon GCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
monosaccharide-sensing protein 2
Names
Os11g0620400
putative sugar transporter protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    26136080..26142769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762219.3 → XP_015617705.1  monosaccharide-sensing protein 2 isoform X1

    UniProtKB/TrEMBL
    Q2R130, Q2R131
    Conserved Domains (1) summary
    cl28910
    Location:5 → 640
    MFS; Major Facilitator Superfamily

  2. XM_015762220.3 → XP_015617706.1  monosaccharide-sensing protein 2 isoform X2

    Conserved Domains (1) summary
    cd06174
    Location:215 → 406
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
Nucleotide Protein
Heading Accession and Version

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