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LOC9269971 uncharacterized LOC9269971 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9269971, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9269971
Gene description
uncharacterized LOC9269971
Locus tag
OSNPB_050547850
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
A2
Expression
Ubiquitous expression in leaves after flowering (RPKM 141.8), roots after flowering (RPKM 123.6) and 6 other tissues See more
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Genomic context

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See LOC9269971 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27344193..27348343, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27179410..27183830, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339506 Neighboring gene uncharacterized LOC4339505 Neighboring gene uncharacterized LOC4339509 Neighboring gene transcription initiation factor IIB-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC9269971
Names
Os05g0547850
cell death-related protein
programmed cell death protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    27344193..27348343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783550.3 → XP_015639036.1  uncharacterized protein LOC9269971

    UniProtKB/TrEMBL
    C7J224, Q5KQD3, Q6ITC5, Q7XJ37
    Conserved Domains (1) summary
    pfam01984
    Location:9 → 120
    dsDNA_bind; Double-stranded DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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