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LOC9270267 transcription factor TGAL6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270267, updated on 10-Oct-2024

Summary

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Gene symbol
LOC9270267
Gene description
transcription factor TGAL6-like
Locus tag
OSNPB_040637000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TGAL6; OsbZIP37; OsJ_16330
Expression
Broad expression in roots before flowering (RPKM 28.3), flowers (RPKM 9.6) and 5 other tissues See more
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Genomic context

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See LOC9270267 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32911029..32919733)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32403273..32412065)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337145 Neighboring gene UBP1-associated protein 2B Neighboring gene protein bfr2 Neighboring gene protein EPIDERMAL PATTERNING FACTOR 2 Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGAL6
Names
LOC_Os04g54474
OSJNBb0034I13.13
Transcription factor TGAL6
bZIP transcription factor 37
transcription factor TGA4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424312.1 → NP_001411241.1  transcription factor TGAL6

    Status: VALIDATED

    Source sequence(s)
    AK066906, AK073715, CI183763, CI542283
    UniProtKB/Swiss-Prot
    A0A0P0WFC8, A3AXU5, B7EMK6, C7J146, Q7XTU9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    32911029..32919733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026024893.2 → XP_025880678.1  transcription factor TGAL6 isoform X1

    UniProtKB/TrEMBL
    A2XY14
    Conserved Domains (3) summary
    cd14686
    Location:80 → 128
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:168 → 244
    DOG1; Seed dormancy control
    cl21462
    Location:79 → 128
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0P0WFC8.1 GenPept UniProtKB/Swiss-Prot:A0A0P0WFC8

Gene LinkOut

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Molecular Biology Databases
Research Materials