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LOC9270337 oligoribonuclease [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270337, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9270337
Gene description
oligoribonuclease
Locus tag
OSNPB_040303950
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC9270337 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (13842214..13847833, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (13610806..13616455, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280796 Neighboring gene uncharacterized LOC4335424 Neighboring gene uncharacterized LOC4335425 Neighboring gene phototropin-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oligoribonuclease
Names
Os04g0303950

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    13842214..13847833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778400.3 → XP_015633886.1  oligoribonuclease

    UniProtKB/TrEMBL
    A2XRP8, Q01LZ3, Q7XVQ9
    Conserved Domains (1) summary
    cd06135
    Location:71 → 243
    Orn; DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins

  2. XM_015778399.3 → XP_015633885.1  oligoribonuclease

    UniProtKB/TrEMBL
    A2XRP8, Q01LZ3, Q7XVQ9
    Conserved Domains (1) summary
    cd06135
    Location:71 → 243
    Orn; DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins
Nucleotide Protein
Heading Accession and Version

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