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LOC9270837 elongation factor Tu, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9270837, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9270837
Gene description
elongation factor Tu, chloroplastic
Locus tag
OSNPB_020595700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
tufA; OJ1126_D09.31-2
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Genomic context

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See LOC9270837 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23594430..23596160)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23111942..23113725)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329857 Neighboring gene isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial Neighboring gene eukaryotic translation initiation factor 4B1 Neighboring gene high-affinity nitrate transporter-activating protein 2.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of the chloroplast elongation factor EF-Tu cDNA of Oryza sativa L. Lee JH, et al. Mol Cells, 1999 Oct 31. PMID 10597036
  2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor Tu, chloroplastic
Names
Os02g0595700
chloroplast translational elongation factor Tu
translational elongation factor Tu
translational elongation factor Tu-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23594430..23596160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771575.3 → XP_015627061.1  elongation factor Tu, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0VL59, C7IYB2, Q6ZI53, Q8W2C3, Q9SEF8
    Conserved Domains (1) summary
    PLN03126
    Location:15 → 467
    PLN03126; Elongation factor Tu; Provisional
Nucleotide Protein
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