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LOC9271477 early nodulin-93 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9271477, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9271477
Gene description
early nodulin-93
Locus tag
OSNPB_060142350
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in milk grains (RPKM 28.5), flower buds (RPKM 13.5) and 2 other tissues See more
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Genomic context

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See LOC9271477 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2366276..2367109, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2208734..2209684, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene early nodulin-93 Neighboring gene early nodulin-93 Neighboring gene early nodulin-93 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC136356953

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
early nodulin-93
Names
Os06g0142350
P0535G04.17
putative early nodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    2366276..2367109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787716.3 → XP_015643202.1  early nodulin-93

    UniProtKB/TrEMBL
    A2Y945, A2Y947, A3B8A0, A3B8A2, Q9SNR0
    Conserved Domains (1) summary
    pfam03386
    Location:13 → 90
    ENOD93; Early nodulin 93 ENOD93 protein
Nucleotide Protein
Heading Accession and Version

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