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LOC9271821 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9271821, updated on 16-Jul-2024

Summary

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Gene symbol
LOC9271821
Gene description
pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
Locus tag
OSNPB_090298100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PFPA4; OJ1381_H04.15
Expression
Broad expression in roots before flowering (RPKM 7.2), leaves before flowering (RPKM 3.3) and 6 other tissues See more
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Genomic context

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See LOC9271821 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (11571438..11576049)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (7240244..7245010)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene GPI-anchored protein LLG1 Neighboring gene uncharacterized LOC4346655 Neighboring gene uncharacterized LOC107278954 Neighboring gene glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic/amyloplastic-like Neighboring gene ethylene-responsive transcription factor 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of the phosphofructokinase gene family in rice and its expression under oxygen deficiency stress. Mustroph A, et al. Front Plant Sci, 2013. PMID 23717315, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to glucose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
Names
Os09g0298100
P0592C05.39
putative pyrophosphate-dependent phosphofructokinase alpha subunit
pyrophosphate-fructose-6-phosphate-phosphotransferase PFPA4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    11571438..11576049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756737.3 → XP_015612223.1  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

    UniProtKB/TrEMBL
    A0A0P0XL64, Q69TA0
    Conserved Domains (1) summary
    PLN03028
    Location:10 → 617
    PLN03028; pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Nucleotide Protein
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