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LOC9272617 uncharacterized LOC9272617 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9272617, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9272617
Gene description
uncharacterized LOC9272617
Locus tag
OSNPB_020305800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC9272617 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (11979723..11985271)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (11944380..11949969)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA4 Neighboring gene uncharacterized LOC4329109 Neighboring gene uncharacterized LOC4329110 Neighboring gene auxin-responsive protein SAUR50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA threonylcarbamoyladenosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EKC/KEOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC9272617
Names
Os02g0305800
P0543C11.13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    11979723..11985271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767152.3 → XP_015622638.1  uncharacterized protein LOC9272617

    UniProtKB/TrEMBL
    A2X3U8, C7IY14, Q6K2Z6
    Conserved Domains (1) summary
    pfam09341
    Location:18 → 91
    Pcc1; Transcription factor Pcc1

  2. XM_015767151.3 → XP_015622637.1  uncharacterized protein LOC9272617

    UniProtKB/TrEMBL
    A2X3U8, C7IY14, Q6K2Z6
    Conserved Domains (1) summary
    pfam09341
    Location:18 → 91
    Pcc1; Transcription factor Pcc1
Nucleotide Protein
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