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    LOC100129254 chromosome 3 open reading frame 38 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100129254, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC100129254
    Gene description
    chromosome 3 open reading frame 38 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100129254 in Genome Data Viewer
    Location:
    22q11.21
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (19630429..19632169, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (20007276..20009016, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (19617952..19619692, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19509616-19510548 Neighboring gene MPRA-validated peak4453 silencer Neighboring gene claudin 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19531837-19532336 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19542168-19542870 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19542871-19543573 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19554961-19555296 Neighboring gene long intergenic non-protein coding RNA 895 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19583904-19584446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19585482-19585982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19585983-19586483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19592881-19593448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19593449-19594016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19594499-19595072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19604675-19605254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19605255-19605833 Neighboring gene Sharpr-MPRA regulatory region 15144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19607854-19608615 Neighboring gene CRISPRi-validated cis-regulatory element chr22.250 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19640940-19641163 Neighboring gene uncharacterized LOC100420103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19654543-19655394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19655395-19656244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19675661-19676509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19679492-19680051 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19692588-19693325 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19693326-19694062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19696168-19696675 Neighboring gene uncharacterized LOC124905079 Neighboring gene septin 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008440.2 

      Range
      101..1841
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      19630429..19632169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      20007276..20009016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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