U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC643168 Rho GTPase activating protein 5 pseudogene [ Homo sapiens (human) ]

    Gene ID: 643168, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC643168
    Gene description
    Rho GTPase activating protein 5 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC643168 in Genome Data Viewer
    Location:
    7p11.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (54933400..54939640)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (55093322..55099562)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55001093..55007333)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54827107-54828042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18185 Neighboring gene SEC61G divergent transcript Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:54847531-54848394 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:54848395-54849258 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:54849259-54850122 Neighboring gene negCOR silencer S2 Neighboring gene uncharacterized LOC124901636 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:54898510-54899709 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:54902010-54902201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55049579-55050078 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:55052801-55054000 Neighboring gene uncharacterized LOC105375284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55087710-55088384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55134605-55135181 Neighboring gene epidermal growth factor receptor Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:55141370-55142569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55198912-55199819 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:55200333-55201532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26011 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55214270-55214808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55219798-55220606 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:55223847-55225046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:55248893-55249512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55249513-55250132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:55253294-55254067 Neighboring gene EGFR antisense RNA 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007014.4 

      Range
      101..6341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      54933400..54939640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      55093322..55099562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials