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    LOC100421161 ependymin related 1 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100421161, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100421161
    Gene description
    ependymin related 1 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100421161 in Genome Data Viewer
    Location:
    8p21.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (25141202..25141835, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (25420066..25420699, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (24998717..24999350, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379330 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:24858047-24858866 Neighboring gene Sharpr-MPRA regulatory region 9467 Neighboring gene uncharacterized LOC124901911 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:25032605-25032808 Neighboring gene uncharacterized LOC124901912 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19032 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19033 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:25054518-25055458 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:25055459-25056397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19034 Neighboring gene dedicator of cytokinesis 5 Neighboring gene MPRA-validated peak6954 silencer Neighboring gene oocyte-secreted protein 4B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a novel family of mammalian ependymin-related proteins (MERPs) in hematopoietic, nonhematopoietic, and malignant tissues. Apostolopoulos J, et al. DNA Cell Biol, 2001 Oct. PMID 11749721

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • ependymin related protein 1 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_026012.2 

      Range
      101..734
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      25141202..25141835 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      25420066..25420699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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