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    LOC100421006 very low density lipoprotein receptor pseudogene [ Homo sapiens (human) ]

    Gene ID: 100421006, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100421006
    Gene description
    very low density lipoprotein receptor pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100421006 in Genome Data Viewer
    Location:
    4q35.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (184072422..184073199)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (187416309..187417086)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (184993575..184994352)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr4:184720870-184721431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184746134-184746634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184746635-184747135 Neighboring gene storkhead box 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184783325-184783826 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:184799524-184800276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:184826003-184826712 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:184826713-184827420 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:184841522-184842187 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:184845527-184846026 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:184894757-184894946 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:184909090-184909876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:184938341-184938840 Neighboring gene uncharacterized LOC107986330 Neighboring gene uncharacterized LOC124900826 Neighboring gene Sharpr-MPRA regulatory region 1728 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:185088565-185089336 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22189 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185091897-185092398 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185129666-185130259 Neighboring gene ribosomal protein L6 pseudogene 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_025276.2 

      Range
      101..878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      184072422..184073199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      187416309..187417086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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