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    LOC100131557 programmed cell death 2 like pseudogene [ Homo sapiens (human) ]

    Gene ID: 100131557, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100131557
    Gene description
    programmed cell death 2 like pseudogene
    See related
    Ensembl:ENSG00000271491
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100131557 in Genome Data Viewer
    Location:
    11p14.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (23370116..23377701, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (23493936..23501510, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (23391662..23399247, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2718 Neighboring gene Sharpr-MPRA regulatory region 14851 Neighboring gene coiled-coil domain containing 179 Neighboring gene uncharacterized LOC124902646 Neighboring gene NANOG hESC enhancer GRCh37_chr11:22944198-22944709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23054822-23055322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23055323-23055823 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:23210858-23211394 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:23325332-23326531 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:23380849-23382048 Neighboring gene microRNA 8054 Neighboring gene WIZ pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021778.1 

      Range
      101..7686
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      23370116..23377701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      23493936..23501510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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