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    LOC100131441 coiled-coil domain containing 65 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100131441, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC100131441
    Gene description
    coiled-coil domain containing 65 pseudogene
    See related
    Ensembl:ENSG00000248847
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100131441 in Genome Data Viewer
    Location:
    4q13.1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (62489376..62490229, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (65926892..65927745, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (63355094..63355947, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900709 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:63226906-63228105 Neighboring gene uncharacterized LOC124900921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21592 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:63303986-63305185 Neighboring gene NANOG hESC enhancer GRCh37_chr4:63381321-63381822 Neighboring gene NANOG hESC enhancer GRCh37_chr4:63396948-63397449 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 11 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:63437219-63437720 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:63597696-63598348 Neighboring gene exocyst complex component 5 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009852.2 

      Range
      101..954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      62489376..62490229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      65926892..65927745 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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