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    LOC100419108 centromere protein L pseudogene [ Homo sapiens (human) ]

    Gene ID: 100419108, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100419108
    Gene description
    centromere protein L pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC100419108 in Genome Data Viewer
    Location:
    2q24.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (160437429..160438261, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (160894921..160895754, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (161293940..161294772, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:161126614-161127223 Neighboring gene long intergenic non-protein coding RNA 2478 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_54032 Neighboring gene RNA binding motif single stranded interacting protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12049 Neighboring gene NANOG hESC enhancer GRCh37_chr2:161274181-161274715 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:161296349-161296920 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:161295775-161296348 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:161305591-161306398 Neighboring gene microRNA 4785 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:161333289-161333788 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:161349859-161350379 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:161350566-161350745 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_54109 Neighboring gene uncharacterized LOC105373718 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_54167 Neighboring gene uncharacterized LOC124907902 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:161712407-161713014 Neighboring gene RNA, 7SL, cytoplasmic 423, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_023625.1 

      Range
      101..933
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      160437429..160438261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      160894921..160895754 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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