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    LOC4336553 subtilisin-like protease SBT2.5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336553, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4336553
    Gene description
    subtilisin-like protease SBT2.5
    Locus tag
    OSNPB_040543700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 2.4), flowers (RPKM 2.0) and 6 other tissues See more
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    Genomic context

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    See LOC4336553 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27726635..27731093)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27221642..27226396)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336551 Neighboring gene cationic amino acid transporter 6, chloroplastic Neighboring gene glutamate dehydrogenase 2, mitochondrial-like Neighboring gene uncharacterized LOC136356073 Neighboring gene small nucleolar RNA Z107/R87

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT2.5
    Names
    Os04g0543700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27726635..27731093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778415.3 → XP_015633901.1  subtilisin-like protease SBT2.5 isoform X1

      UniProtKB/TrEMBL
      Q68Q08, Q7XN07
      Conserved Domains (6) summary
      cd04852
      Location:149 → 651
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      COG1404
      Location:466 → 752
      AprE; Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones]
      pfam00082
      Location:174 → 661
      Peptidase_S8; Subtilase family
      pfam05922
      Location:78 → 147
      Inhibitor_I9; Peptidase inhibitor I9
      pfam06280
      Location:756 → 825
      fn3_5; Fn3-like domain
      cl10459
      Location:448 → 651
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    2. XM_066309512.1 → XP_066165609.1  subtilisin-like protease SBT2.5 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WDE6, Q0JBB7
    Nucleotide Protein
    Heading Accession and Version

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