LOC4337280 transcription factor IBH1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337280
Gene description: transcription factor IBH1-like
Locus tag: OSNPB_040660100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: IBH1; OsIBH1; BHLH175; 24K23.21; OsbHLH175
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Genomic context

Location:: chromosome: 4

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (33682212..33683810, complement)

Chromosome 4 - NC_029259.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription factor IBH1

Names: Basic helix-loop-helix protein 175; LOC_Os04g56500; OSJNBa0015K02.11; Protein ILI1-BINDING BHLH 1; bHLH transcription factor bHLH175

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001419908.1 → NP_001406837.1 transcription factor IBH1

Status: VALIDATED

Source sequence(s)

AK109923, CI188192, CI410065, CI765786

UniProtKB/Swiss-Prot

A0A0P0WFY9, B8AW07, Q01I07, Q7XR02

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029259.1 Reference IRGSP-1.0 Primary Assembly

Range

33682212..33683810 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015778080.2 → XP_015633566.1 transcription factor IBH1

UniProtKB/Swiss-Prot

Q7XR02

Conserved Domains (1) summary

cl00081
Location:155 → 196

bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily