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    LOC4349013 lanC-like protein GCL2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349013, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349013
    Gene description
    lanC-like protein GCL2
    Locus tag
    OSNPB_100497900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 10.3), roots before flowering (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19679232..19683999)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18986234..18991956)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 4 Neighboring gene probable prolyl 4-hydroxylase 3 Neighboring gene uncharacterized LOC4349014 Neighboring gene uncharacterized LOC9267999 Neighboring gene uncharacterized LOC4349016

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptide modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lanC-like protein GCL2
    Names
    Os10g0497900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19679232..19683999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757272.3 → XP_015612758.1  lanC-like protein GCL2 isoform X1

      UniProtKB/TrEMBL
      Q0IWN8
      Conserved Domains (1) summary
      pfam05147
      Location:106 → 448
      LANC_like; Lanthionine synthetase C-like protein

    2. XM_015757273.3 → XP_015612759.1  lanC-like protein GCL2 isoform X2

      UniProtKB/TrEMBL
      Q0IWN8, Q8W3F0
      Conserved Domains (1) summary
      pfam05147
      Location:106 → 446
      LANC_like; Lanthionine synthetase C-like protein

    RNA

    1. XR_001540200.3 RNA Sequence

    2. XR_010737125.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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