LOC4334191 probable protein phosphatase 2C 34 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4334191
Gene description: probable protein phosphatase 2C 34
Locus tag: OSNPB_030761100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: BIPP2C2; OsPP2C34; OsBIPP2C2; OsJ_12676
Expression: Broad expression in roots before flowering (RPKM 205.8), leaves after flowering (RPKM 86.2) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (31472129..31474889, complement)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The gene is induced by gibberellin. T-DNA insertion mutants exhibit 1)shortened plant height and internode length, 2) delayed induction of 2 GA-induced amylases, and 3) phosphorylation of a 65 kDa protein during early germination.
Title: Isolation of a novel protein phosphatase2C in rice and its response to gibberellin.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cation binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable protein phosphatase 2C 34

Names: BTH-induced protein phosphatase 2C 2; LOC_Os03g55320; OSJNBb0048A17.8

XP_015631940.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402272.1 → NP_001389201.1 probable protein phosphatase 2C 34

Status: VALIDATED

Source sequence(s)

AK102620, AU076215, CB658198, CI761806

UniProtKB/Swiss-Prot

A2XM81, B9F5U1, Q10EH6, Q10EH8, Q5MFV4, Q5MFV5, Q94H98

UniProtKB/TrEMBL

B8AK89

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

31472129..31474889 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015776454.2 → XP_015631940.1 probable protein phosphatase 2C 34

UniProtKB/Swiss-Prot

Q94H98

Conserved Domains (1) summary

cd00143
Location:36 → 335

PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...