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    LOC4335507 aspartic proteinase 36 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335507, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335507
    Gene description
    aspartic proteinase 36
    Locus tag
    OSNPB_040337000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 25.9), flowers (RPKM 9.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (16191810..16200977, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (15844631..15853780, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene aspartic proteinase 36 Neighboring gene importin beta-like SAD2 Neighboring gene uncharacterized LOC107280546

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartic proteinase 36
    Names
    Os04g0337000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      16191810..16200977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781752.3 → XP_015637238.1  aspartic proteinase 36 isoform X2

      UniProtKB/TrEMBL
      B8ASB0, B9FEH1, Q01KZ0, Q7X8W3
      Conserved Domains (2) summary
      cd05476
      Location:89 → 446
      pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
      cl11403
      Location:89 → 171
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

    2. XM_066309718.1 → XP_066165815.1  aspartic proteinase 36 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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