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    LINC01701 long intergenic non-protein coding RNA 1701 [ Homo sapiens (human) ]

    Gene ID: 107985456, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC01701provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1701provided by HGNC
    Primary source
    HGNC:HGNC:52489
    See related
    Ensembl:ENSG00000232212 AllianceGenome:HGNC:52489
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01701 in Genome Data Viewer
    Location:
    1q31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (189775469..189814918)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (189121472..189160866)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371657 Neighboring gene MPRA-validated peak539 silencer Neighboring gene MPRA-validated peak540 silencer Neighboring gene MPRA-validated peak542 silencer Neighboring gene MPRA-validated peak543 silencer Neighboring gene MPRA-validated peak545 silencer Neighboring gene MPRA-validated peak546 silencer Neighboring gene RNA, 5S ribosomal pseudogene 73 Neighboring gene MPRA-validated peak549 silencer Neighboring gene MPRA-validated peak550 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:189868671-189869595 Neighboring gene MPRA-validated peak553 silencer Neighboring gene MPRA-validated peak555 silencer Neighboring gene DExH-box helicase 29 pseudogene Neighboring gene BMP/retinoic acid inducible neural specific 3 Neighboring gene MPRA-validated peak561 silencer Neighboring gene uncharacterized LOC105371659 Neighboring gene MPRA-validated peak563 silencer Neighboring gene MPRA-validated peak564 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      189775469..189814918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001737811.1 RNA Sequence

      Related
      ENST00000419614.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      189121472..189160866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007069701.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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