U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Genome

    • Showing Current items.

    pol polyprotein [ Sacbrood virus ]

    Gene ID: 1450776, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    pol
    Gene description
    polyprotein
    Locus tag
    SBVgp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sacbrood virus (strain: Rothamstead)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Iflaviridae; Iflavirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_002066.1 (179..8755)

    NC_002066.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_002066.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The nucleotide sequence of sacbrood virus of the honey bee: an insect picorna-like virus. Ghosh RC, et al. J Gen Virol, 1999 Jun. PMID 10374974

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002066.1 Reference assembly

      Range
      179..8755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_049374.1 polyprotein [Sacbrood virus]

      See identical proteins and their annotated locations for NP_049374.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A223FUL8, Q9WCE9
      Conserved Domains (5) summary
      cd00205
      Location:494 → 681
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam12381
      Location:2090 → 2304
      Peptidase_C3G; Tungro spherical virus-type peptidase
      cd01699
      Location:2502 → 2793
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
      pfam00910
      Location:1376 → 1485
      RNA_helicase; RNA helicase
      cl13999
      Location:790 → 982
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.