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    LOC100131289 uncharacterized LOC100131289 [ Homo sapiens (human) ]

    Gene ID: 100131289, updated on 17-Jun-2024

    Summary

    Gene symbol
    LOC100131289
    Gene description
    uncharacterized LOC100131289
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in ovary (RPKM 1.7), prostate (RPKM 1.6) and 22 other tissues See more
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    Genomic context

    See LOC100131289 in Genome Data Viewer
    Location:
    6p22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27761744..27763187)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27631436..27632874)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (27729523..27730966)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:27705353-27706552 Neighboring gene G protein-coupled receptor 89 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24304 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24305 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17038 Neighboring gene tRNA-Val (anticodon AAC) 1-5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:27738157-27738797 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:27738798-27739437 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17039 Neighboring gene ribosomal L24 domain containing 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17040 Neighboring gene tRNA-Gln (anticodon CTG) 6-1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038929.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AL009179

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      27761744..27763187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      27631436..27632874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)