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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_031980.2 RefSeqGene
- Range
-
4992..142934
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001256071.3 → NP_001243000.2 E3 ubiquitin-protein ligase RNF213 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AB537889, AC123764, AC124319
- Consensus CDS
-
CCDS58606.1
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
- UniProtKB/TrEMBL
-
A0A0A0MTR7
- Related
- ENSP00000464087.1, ENST00000582970.6
- Conserved Domains (3) summary
-
- smart00382
Location:2413 → 2526
- AAA; ATPases associated with a variety of cellular activities
- PHA03169
Location:134 → 309
- PHA03169; hypothetical protein; Provisional
- cd16561
Location:3993 → 4043
- RING-HC_RNF213; RING finger, HC subclass, found in RING finger protein 213 (RNF213) and similar proteins
-
NM_001410195.1 → NP_001397124.1 E3 ubiquitin-protein ligase RNF213 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC123764, AC124319, KC877677, KF510430
- Consensus CDS
-
CCDS32761.2
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
- UniProtKB/TrEMBL
-
A0A0A0MTC1
-
NM_020914.5 → NP_065965.5 protein ALO17 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC123764, AC124319, KC877677, KF510430
- Consensus CDS
-
CCDS32761.2
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
- UniProtKB/TrEMBL
-
A0A0A0MTC1
- Related
- ENSP00000425956.2, ENST00000508628.6
-
NM_020954.4 → NP_066005.2 E3 ubiquitin-protein ligase RNF213 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks several 3' exons but includes an alternate 3' exon, and it thus differs in its 3' coding region and 3' UTR, compared to variant 3. The encoded isoform (2) has a distinct and significantly shorter C-terminus, compared to isoform 3.
- Source sequence(s)
-
AB537889, AC123764, AC124319, BC040341, DW443658
- Consensus CDS
-
CCDS11772.1
- UniProtKB/Swiss-Prot
-
Q63HN8
- Related
- ENSP00000324392.4, ENST00000319921.4
- Conserved Domains (1) summary
-
- cl21589
Location:108 → 279
- Relaxase; Relaxase/Mobilization nuclease domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
80260852..80398794
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047436482.1 → XP_047292438.1 E3 ubiquitin-protein ligase RNF213 isoform X1
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
- UniProtKB/TrEMBL
-
A0A0A0MTR7
- Conserved Domains (3) summary
-
- smart00382
Location:2413 → 2526
- AAA; ATPases associated with a variety of cellular activities
- PHA03169
Location:134 → 309
- PHA03169; hypothetical protein; Provisional
- cd16561
Location:3993 → 4043
- RING-HC_RNF213; RING finger, HC subclass, found in RING finger protein 213 (RNF213) and similar proteins
-
XM_011525084.3 → XP_011523386.1 E3 ubiquitin-protein ligase RNF213 isoform X3
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
- Conserved Domains (3) summary
-
- cd00009
Location:2464 → 2575
- AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
- smart00382
Location:2462 → 2575
- AAA; ATPases associated with a variety of cellular activities
- cd00162
Location:4046 → 4084
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
XM_047436483.1 → XP_047292439.1 E3 ubiquitin-protein ligase RNF213 isoform X4
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
-
XM_011525086.3 → XP_011523388.1 E3 ubiquitin-protein ligase RNF213 isoform X5
- Conserved Domains (3) summary
-
- cd00009
Location:2464 → 2575
- AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
- smart00382
Location:2462 → 2575
- AAA; ATPases associated with a variety of cellular activities
- cd00162
Location:4046 → 4084
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
XM_011525087.4 → XP_011523389.1 E3 ubiquitin-protein ligase RNF213 isoform X6
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XM_047436484.1 → XP_047292440.1 E3 ubiquitin-protein ligase RNF213 isoform X7
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XM_017024905.3 → XP_016880394.1 E3 ubiquitin-protein ligase RNF213 isoform X2
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
RNA
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XR_007065355.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
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NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
81161115..81300623
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054316794.1 → XP_054172769.1 E3 ubiquitin-protein ligase RNF213 isoform X8
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
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XM_054316795.1 → XP_054172770.1 E3 ubiquitin-protein ligase RNF213 isoform X1
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
-
XM_054316798.1 → XP_054172773.1 E3 ubiquitin-protein ligase RNF213 isoform X3
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
-
XM_054316799.1 → XP_054172774.1 E3 ubiquitin-protein ligase RNF213 isoform X4
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
-
XM_054316800.1 → XP_054172775.1 E3 ubiquitin-protein ligase RNF213 isoform X5
-
XM_054316801.1 → XP_054172776.1 E3 ubiquitin-protein ligase RNF213 isoform X6
-
XM_054316796.1 → XP_054172771.1 E3 ubiquitin-protein ligase RNF213 isoform X1
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
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XM_054316802.1 → XP_054172777.1 E3 ubiquitin-protein ligase RNF213 isoform X7
-
XM_054316797.1 → XP_054172772.1 E3 ubiquitin-protein ligase RNF213 isoform X2
- UniProtKB/Swiss-Prot
- C9JCP4, D6RI12, F8WKS1, Q63HN8, Q658P6, Q69YK7, Q6MZR1, Q8IWF4, Q8IZX1, Q8IZX2, Q8N406, Q8TEU0, Q9H6C9, Q9H6H9, Q9H6P3, Q9H8A9, Q9HCF4, Q9HCL8
RNA
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XR_008484867.1 RNA Sequence