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    C3orf85 chromosome 3 open reading frame 85 [ Homo sapiens (human) ]

    Gene ID: 401081, updated on 17-Sep-2024

    Summary

    Official Symbol
    C3orf85provided by HGNC
    Official Full Name
    chromosome 3 open reading frame 85provided by HGNC
    Primary source
    HGNC:HGNC:53432
    See related
    Ensembl:ENSG00000241224 AllianceGenome:HGNC:53432
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in duodenum (RPKM 15.1), small intestine (RPKM 13.5) and 3 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C3orf85 in Genome Data Viewer
    Location:
    3q13.13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (109136719..109151401)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (111856999..111871681)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (108855566..108870248)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MORC family CW-type zinc finger 1 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20223 Neighboring gene MORC1 antisense RNA 1 Neighboring gene long intergenic non-protein coding RNA 488 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:108918367-108918990 Neighboring gene RNA, U6 small nuclear 1236, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
    EBI GWAS Catalog
    Genome-wide diet-gene interaction analyses for risk of colorectal cancer.
    EBI GWAS Catalog

    General protein information

    Preferred Names
    uncharacterized protein C3orf85

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001351622.2NP_001338551.1  uncharacterized protein C3orf85 precursor

      Status: VALIDATED

      Source sequence(s)
      AC063923, KF457669
      Consensus CDS
      CCDS87119.1
      UniProtKB/Swiss-Prot
      A0A1B0GTC6
      Related
      ENSP00000489642.1, ENST00000622536.6

    RNA

    1. NR_161294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC063923, KF457669

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      109136719..109151401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      111856999..111871681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001351623.1: Suppressed sequence

      Description
      NM_001351623.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.