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    LINC00207 long intergenic non-protein coding RNA 207 [ Homo sapiens (human) ]

    Gene ID: 388910, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC00207provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 207provided by HGNC
    Primary source
    HGNC:HGNC:37255
    See related
    Ensembl:ENSG00000187012 AllianceGenome:HGNC:37255
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NCRNA00207
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00207 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (44569340..44572449)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (45053126..45056235)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (44965220..44968329)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44939408-44939962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44939963-44940517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44941073-44941626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44946331-44946858 Neighboring gene keratin 18 pseudogene 23 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44970093-44970632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44988307-44988808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44990461-44991156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44991157-44991851 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44992547-44993241 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45003083-45003788 Neighboring gene long intergenic non-protein coding RNA 229 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45013983-45014484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45015586-45016350 Neighboring gene uncharacterized LOC105373060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45020177-45020676 Neighboring gene acidic nuclear phosphoprotein 32 family member B pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The genetic architecture of economic and political preferences. Benjamin DJ, et al. Proc Natl Acad Sci U S A, 2012 May 22. PMID 22566634, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    The genetic architecture of economic and political preferences.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028409.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL022333, BC144508, BU585030
      Related
      ENST00000605505.1

    2. NR_028410.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate internal exon and uses and alternate splice site, compared to variant 1.
      Source sequence(s)
      AL022333, BC144506, BU585030
      Related
      ENST00000603530.5

    3. NR_028411.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate internal exon, compared to variant 1.
      Source sequence(s)
      AL022333, BU585030
      Related
      ENST00000657777.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      44569340..44572449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      45053126..45056235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012986.1: Suppressed sequence

      Description
      NM_001012986.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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