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    LINC00494 long intergenic non-protein coding RNA 494 [ Homo sapiens (human) ]

    Gene ID: 284749, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00494provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 494provided by HGNC
    Primary source
    HGNC:HGNC:27657
    See related
    Ensembl:ENSG00000235621 AllianceGenome:HGNC:27657
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.5), spleen (RPKM 1.9) and 9 other tissues See more
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    Genomic context

    See LINC00494 in Genome Data Viewer
    Location:
    20q13.13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (48359911..48370638)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (50128721..50139448)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (46988654..46999381)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46833156-46833688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46834755-46835286 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:46842063-46842887 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46857183-46857312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46870479-46870978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46888828-46889328 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:46893650-46894849 Neighboring gene NANOG hESC enhancer GRCh37_chr20:46895251-46895778 Neighboring gene uncharacterized LOC124904924 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46921157-46921901 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46923391-46924136 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46924137-46924880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46924881-46925625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46948811-46949389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18017 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46979410-46979659 Neighboring gene uncharacterized LOC105372643 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47034597-47035373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47054573-47055079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47083129-47083690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18018 Neighboring gene uncharacterized LOC105372645

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026958.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA400799, AL832259, BC035164, DB034461
      Related
      ENST00000416742.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      48359911..48370638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      50128721..50139448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)