U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5486 predicted gene 5486 [ Mus musculus (house mouse) ]

    Gene ID: 433024, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gm5486provided by MGI
    Official Full Name
    predicted gene 5486provided by MGI
    Primary source
    MGI:MGI:3647871
    See related
    AllianceGenome:MGI:3647871
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433024
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    Go to the top of the page Help
    See Gm5486 in Genome Data Viewer
    Location:
    16; 16 B5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (49746284..49790621, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (49925921..49970189, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40971 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49818780-49819076 Neighboring gene predicted gene, 16619 Neighboring gene predicted gene 4633 Neighboring gene STARR-seq mESC enhancer starr_40972 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49856157-49856266 Neighboring gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer) Neighboring gene STARR-positive B cell enhancer mm9_chr16:49907578-49907878 Neighboring gene STARR-seq mESC enhancer starr_40973 Neighboring gene STARR-positive B cell enhancer ABC_E7456 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49970625-49970926 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49971104-49971405 Neighboring gene predicted gene, 19723 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49982479-49982780 Neighboring gene predicted gene 6936 Neighboring gene STARR-positive B cell enhancer ABC_E5545 Neighboring gene STARR-seq mESC enhancer starr_40976 Neighboring gene predicted gene 4827 Neighboring gene STARR-seq mESC enhancer starr_40978 Neighboring gene predicted gene, 32101

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      49746284..49790621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003951931.2 RNA Sequence

    2. XR_001781910.3 RNA Sequence

    3. XR_003951933.1 RNA Sequence

    4. XR_003951932.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001034884.1: Suppressed sequence

      Description
      NM_001034884.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.