U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nlrp1c-ps NLR family, pyrin domain containing 1C, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 627984, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Nlrp1c-psprovided by MGI
    Official Full Name
    NLR family, pyrin domain containing 1C, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:3582962
    See related
    Ensembl:ENSMUSG00000121474 AllianceGenome:MGI:3582962
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nalp1c; Nlrp1c
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Nlrp1c-ps in Genome Data Viewer
    Location:
    11 B4; 11 43.29 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (71133256..71176058, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (71242430..71285232, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 1A Neighboring gene NLR family, pyrin domain containing 1B Neighboring gene predicted gene, 23266 Neighboring gene STARR-seq mESC enhancer starr_29885 Neighboring gene predicted gene, 23311 Neighboring gene calponin 2 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Frontline Science: Anthrax lethal toxin-induced, NLRP1-mediated IL-1β release is a neutrophil and PAD4-dependent event. Greaney AJ, et al. J Leukoc Biol, 2020 Sep. PMID 32421904, Free PMC Article
    2. Nalp1b controls mouse macrophage susceptibility to anthrax lethal toxin. Boyden ED, et al. Nat Genet, 2006 Feb. PMID 16429160
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • NACHT-, LRR-, and PYD-containing 1 paralog c

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027858.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      DQ117602
      Related
      ENSMUST00000171546.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      71133256..71176058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039234.1: Suppressed sequence

      Description
      NM_001039234.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.